Ron Shamir's Lab

Popular repositories Loading

1. Recycler Recycler Public

   This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran H…

   Python 58 7

2. SCAPP SCAPP Public

   SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-021-01068-z

   Python 39 5

3. PlasClass PlasClass Public

   A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007781

   Python 34 7

4. Multi-Omics-Cancer-Benchmark Multi-Omics-Cancer-Benchmark Public

   R 26 21

5. NEMO NEMO Public

   R 19 4

6. Faucet Faucet Public

   This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye Rozov, Gil Goldshlager, Eran Halperin, and Ron Shamir

   C++ 18 3