Scalable long read self-correction and assembly polishing with multiple sequence alignment
Collection of blogs/publications by Nepali devs.
Study material (pdfs, notes, free course download links etc) for HACKERS
A Raspberry Pi Simple python Stand Alone Local Network Web Server. Automatically reads folder and file entries into a right pane selection list. Selected folder opens a new browser tab and Selected file displays content in browser left pane iframe. Right pane list can be ordered by date/time or alphabetic ascending or descending via settings.py …
Standalone tool and library allowing to work with barcoded linked-reads
Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads
Assembled Phi-X174 genome using Overlap Graph, Kmer Composition and De-Bruijn Graph.
Ancient DNA Read Simulator for Metagenomic
🦀 Fqkit: A simple and cross-platform program for fastq file manipulation
R functions and workflow for submitting amplicon sequence data to the ENA.
Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, …
Genome read alignments visualizer
A tool to index and extract data from gzipped FASTQ files
Complete Pipeline for RNA-seq data analysis: From FastQ to differntial gene expression to annotated Variations.
Preprocessing of raw reads obtained using ARTIC's protocol for sequencing SARS-CoV-2 genome.
Python code to detect ECGR Mutations; Takes a reference genome and bunch of reads as input and finds mutations (1-3 bp length) where number of supporting reads greater than 5
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